PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO63136
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C2H2
Protein Properties Length: 400aa    MW: 45284.3 Da    PI: 9.7009
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO63136genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00067260281223
               EETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
               +C+ Cg++F+++++  +H+ +H
  OMO63136 260 QCKTCGQRFKTQEEHSKHMDRH 281
               7******************999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    
MASEIVFVER TTKRARLFAP PPSPPYTTVP NIFPPPQNHS APPYYLNRPG VPTPRMVPNP  60
VPYYPTQNQG FNLANSNPNP RHDVHRPPIT ARASPVPVQG FILTNPNPNK RRYGDVDRVP  120
IMARASPVLN QDSRYQQRQG FYPPPQPGVP VQNTNGRLFT TSTVINPQHA PPPNFVSPYG  180
TVTNPTVSQT RNPSTVRVNE LSSSILSELF RSINAQEGLA NPKEEEKPVE EEVPSEFDAA  240
WLKVRHESVI KSLYSDIPRQ CKTCGQRFKT QEEHSKHMDR HVRKNRELKK IKKMKPSRPW  300
LLTQSLWLKA IETPENGGIP FFLRQRDSTD EKVIKEFAVP ADENQTLCAL CMEGFEDFYS  360
DETEDWMYRG TVYKNDPNGS MAAAGKDRSK LGPIVHAKCL