PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO63748
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 259aa    MW: 29818.7 Da    PI: 9.3892
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO63748genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.21.9e-50141401128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel.. 99 
               lppGfrFhPtdeelvv+yL++kv + +l++ ++i+evd++k++Pw+Lp      e+e yfFs+r+ ky++g+r+nrat sgyWkatg dk++++ ++++  
  OMO63748  14 LPPGFRFHPTDEELVVQYLRRKVLAWPLPA-SIIPEVDVCKSDPWELPGD---LEQERYFFSTREAKYPNGNRSNRATLSGYWKATGIDKQIVTCRSNQvv 110
               79****************************.89***************54...46799**********************************998555456 PP

       NAM 100 .vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kktLvfy+g+ p+g++tdW+mheyrl
  OMO63748 111 lVGMKKTLVFYRGKPPHGSRTDWIMHEYRL 140
               69**************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MEKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLRRKVLAWP LPASIIPEVD VCKSDPWELP  60
GDLEQERYFF STREAKYPNG NRSNRATLSG YWKATGIDKQ IVTCRSNQVV LVGMKKTLVF  120
YRGKPPHGSR TDWIMHEYRL VHTNAPNQIS LTQQAVPLEN WVLCRIFFKN RCTSRHHNHH  180
NNTKNDCTMQ SCNDKKQPKT GPVFYDFLTK ERTSTTDLNL APSSSSSASS GITQVSHNDT  240
DDHEESSSCN SFPYFRRKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-104NAC family protein