PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO63753

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C3H

Protein Properties

Length: 478aa MW: 51319.6 Da PI: 8.9179

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO63753	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.4	1.8e-11	49	75	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ + C +++rtG+C yG+rC+++H++ OMO63753 49 PGVPDCVYYMRTGFCGYGNRCRYNHPR 75 57899********************96 PP
2	zf-CCCH	40.1	6e-13	94	120	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tGtCk+G++CkF+H++ OMO63753 94 PGEPACQFYLKTGTCKFGASCKFHHPK 120 57899********************96 PP
3	zf-CCCH	36.6	7.5e-12	141	166	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ OMO63753 141 GEKECSYYLKTGQCKFGITCKFHHPQ 166 7899********************97 PP
4	zf-CCCH	36.5	8.3e-12	297	323	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H++ OMO63753 297 PGEPECQYYLRTGDCKFGSSCRYHHPR 323 5799*********************96 PP
5	zf-CCCH	36.3	9.4e-12	344	369	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C+f++++G+Ck+G++CkF H++ OMO63753 344 GVQPCSFYLQNGHCKFGSTCKFDHPM 369 6789********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MELYGRNPAR NGSQSGHQPE WSPAGPETGL EESMWQLSLR GSESYPERPG VPDCVYYMRT 60 GFCGYGNRCR YNHPRNRAAV EAAVRATGEY PERPGEPACQ FYLKTGTCKF GASCKFHHPK 120 HAGGSFSQVP LNIYGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPAGT SMPASAPQFY 180 QPVQSPSVPV PEQYGGASTN VRVARPPLVP GSYVQGAYGP VLFSPGVVPI PGWSHYSAPV 240 SPVLSPGAQP AVGATSLYGL TQLSSSTPSL AGPYPSLPSS TGPSSSNQKE QTFPERPGEP 300 ECQYYLRTGD CKFGSSCRYH HPRDRVVPRT NCVLSPMGLP LRPGVQPCSF YLQNGHCKFG 360 STCKFDHPMG TTTMRYSPSA SSLIDMPVAP YPVGSLLATL APSSSSSDLR PELISGSKKD 420 SYLTRIPSSA STSSSSVGLI FSQTGSVPLS DLQLSSQSSV PLSSSRSTRQ GGEVRRST

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MELYGRNPAR NGSQSGHQPE WSPAGPETGL EESMWQLSLR GSESYPERPG VPDCVYYMRT  60
GFCGYGNRCR YNHPRNRAAV EAAVRATGEY PERPGEPACQ FYLKTGTCKF GASCKFHHPK  120
HAGGSFSQVP LNIYGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPAGT SMPASAPQFY  180
QPVQSPSVPV PEQYGGASTN VRVARPPLVP GSYVQGAYGP VLFSPGVVPI PGWSHYSAPV  240
SPVLSPGAQP AVGATSLYGL TQLSSSTPSL AGPYPSLPSS TGPSSSNQKE QTFPERPGEP  300
ECQYYLRTGD CKFGSSCRYH HPRDRVVPRT NCVLSPMGLP LRPGVQPCSF YLQNGHCKFG  360
STCKFDHPMG TTTMRYSPSA SSLIDMPVAP YPVGSLLATL APSSSSSDLR PELISGSKKD  420
SYLTRIPSSA STSSSSVGLI FSQTGSVPLS DLQLSSQSSV PLSSSRSTRQ GGEVRRST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OMO63753