PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO63892
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 308aa    MW: 35265.7 Da    PI: 4.9264
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO63892genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-1972120355
       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  OMO63892  72 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 120
               9*******.**********954...4************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MCGGAIIADF IPRKRGRGVT ASDLWPNSPF DKTNVFNSEF CQLGHNDFER PRPFQGDHEQ  60
VEKKPRQRKN LYRGIRQRPW GKWAAEIRDP RKGVRVWLGT FNTAEEAARA YDREARKIRG  120
KKAKVNFPNE DDAFSIQYNN QDPHQYFNNH HEINNHNNSA TSWNPNPNLN SSINYPQPCN  180
NNILDTNNHG FGYDLNQFGG YATDPIVISG EENSASGSEA AYSYCNNPDM MSNVCFAAPV  240
KVEEEEELLA ENRVVGQVGE ENQVEKLSEE LMAYENYMKF YQIPYVDGQS TTEENASVPR  300
ENVIDELW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.18e-33ERF family protein