PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO63935
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C2H2
Protein Properties Length: 195aa    MW: 21533.1 Da    PI: 8.8338
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO63935genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000115274123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              ++Cp C ++F ++  L  H++ H
  OMO63935 52 FECPFCRRVFANSQALGGHQNAH 74
              89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MADMAPDKQS DYNQQKPSSS SLKLFGFSLT DDQEEILEKA ADDEDFGESR KFECPFCRRV  60
FANSQALGGH QNAHKRERQR ARRAQFQHHH QRYVAATPVL SSHAVRTSIP PTAFPRGFTT  120
TNGSSGKFVA PTTGYCPSRP LLLPSTPSQY APRIYLAQPL HFATATPVFT EFSGKLPEGP  180
DIGSIDLHLK LSPSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.18e-07C2H2 family protein