PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO64129

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 1281aa MW: 143100 Da PI: 9.2645

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO64129	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.8	1.1e-14	1092	1139	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + hn Er+RRd+iN+++ L+el+P++ K++Ka++L +A+eY+k Lq OMO64129 1092 EVHNLSERKRRDKINKKMRALQELIPNC-----NKVDKASMLDEAMEYLKTLQ 1139 56***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1281 aa Download sequence
MSDCRSFGSN YYPSSQSRKI SVGVMVDSLA KRKAVTPKED DRKLPNTERT EPSTGISTEE 60 KNRGGVFRKQ KEDPEQVKSP WISPRSFHKT LAPETVFCQG ETSNSRQKKL NAVKDVPVTY 120 SVQYFPNQTL NVKNVGSHQT MFDGLMDKKH GEKDNSSQKA EEFNFPNAVD KVVLEDKADN 180 SQNVQTETLK MKLQQLFGTV SSPKSQQSIS HSPKAGANNL KPEITTADHM GDPVAKRRQN 240 SDTIETDSDN PDKSVKRPVT RSLTRKRAPA RVQPAKNNVG LSSKQAHGES IVSFGEGRST 300 KMDGADNSGS SLSRKRKIQK KNSKINPRKI SFHEEDNAVE IQKTTYRSET PLPVKKASSL 360 GKKIESFLGS FSEKRRENFG KVQENGSVHS PVLSEKKQQA NFDNPTSPEK GDKQEDFCTI 420 SLRNAAYAED AFQSPTFGFR TAKTKSSQSP TPKTVEKEQG DCSPVPSERG FTIGNIWSFR 480 NFHTPRPVSN KSNSQAVSPD DAEVHRSSSL RNPMPTKEKM DAVDMHSEAS SEEGSDSDSE 540 CSEEGSPIIN RYNCHRENLN SPETVIAEKP KFVHRPIKGL RNHEDVRLGT AESYWFKEQS 600 EQDQEDELTR AVTLFALALE TFKRKMDSAT TKKSSEILTS VSEEIKLLLQ NAGSQIESDV 660 GKLTSLSKTK RKRLETRFQE KQEQLKLILE KFNEDIHNHL LDCRSTVDGM EAHQIELKET 720 MKKQKVSHQK LLMHVEEAVG IQINDAERKI TAVHESAREK MLQLKHVVAE CLKDTSFSKF 780 LKIRKMIFTA NDNRSKDIGV ADSTFGSGLT KLDLNNHDKS KMNSYPRSNY AELLSEFYED 840 HDFSVKQVMD SHVVPAVSKF NSFKQSDDGH GSRKLVGEMM PHLMNSDREV PDDHHHPSSL 900 KQCEVSVPFM RSNSGVEEKR DRVNFSMFLR SGATTRPRSQ VPALAEDIFE RNIVRSAPRR 960 SSSPSPEQGN LMGNYNTKPI LPDSDDPEKE KETLPDDQQS EAVGYNQDTV PPNSRSSKGN 1020 IPCDGKFVEQ MVGSSSVCSR GASNCPTYTL KTRYDQDTDL SENATEEPEG RTSTKAAPPR 1080 GSKGVKKKRK AEVHNLSERK RRDKINKKMR ALQELIPNCN KVDKASMLDE AMEYLKTLQL 1140 QVQMMSMGSG FFMPPNPMML HTAMQHMNAQ NLIGPYSPMG MRMQMGMGMG MSMGMGMGMG 1200 FPNLPGIREA RLNNMVGFPG QVSLMSMSPS PFAAARFCPQ SVQAPAPAFH MPMQVEQFPV 1260 PGVAPNAIPL STSKDSNTTC Q

Sequence ? help Back to Top

Protein Sequence Length: 1281 aa Download sequence

MSDCRSFGSN YYPSSQSRKI SVGVMVDSLA KRKAVTPKED DRKLPNTERT EPSTGISTEE  60
KNRGGVFRKQ KEDPEQVKSP WISPRSFHKT LAPETVFCQG ETSNSRQKKL NAVKDVPVTY  120
SVQYFPNQTL NVKNVGSHQT MFDGLMDKKH GEKDNSSQKA EEFNFPNAVD KVVLEDKADN  180
SQNVQTETLK MKLQQLFGTV SSPKSQQSIS HSPKAGANNL KPEITTADHM GDPVAKRRQN  240
SDTIETDSDN PDKSVKRPVT RSLTRKRAPA RVQPAKNNVG LSSKQAHGES IVSFGEGRST  300
KMDGADNSGS SLSRKRKIQK KNSKINPRKI SFHEEDNAVE IQKTTYRSET PLPVKKASSL  360
GKKIESFLGS FSEKRRENFG KVQENGSVHS PVLSEKKQQA NFDNPTSPEK GDKQEDFCTI  420
SLRNAAYAED AFQSPTFGFR TAKTKSSQSP TPKTVEKEQG DCSPVPSERG FTIGNIWSFR  480
NFHTPRPVSN KSNSQAVSPD DAEVHRSSSL RNPMPTKEKM DAVDMHSEAS SEEGSDSDSE  540
CSEEGSPIIN RYNCHRENLN SPETVIAEKP KFVHRPIKGL RNHEDVRLGT AESYWFKEQS  600
EQDQEDELTR AVTLFALALE TFKRKMDSAT TKKSSEILTS VSEEIKLLLQ NAGSQIESDV  660
GKLTSLSKTK RKRLETRFQE KQEQLKLILE KFNEDIHNHL LDCRSTVDGM EAHQIELKET  720
MKKQKVSHQK LLMHVEEAVG IQINDAERKI TAVHESAREK MLQLKHVVAE CLKDTSFSKF  780
LKIRKMIFTA NDNRSKDIGV ADSTFGSGLT KLDLNNHDKS KMNSYPRSNY AELLSEFYED  840
HDFSVKQVMD SHVVPAVSKF NSFKQSDDGH GSRKLVGEMM PHLMNSDREV PDDHHHPSSL  900
KQCEVSVPFM RSNSGVEEKR DRVNFSMFLR SGATTRPRSQ VPALAEDIFE RNIVRSAPRR  960
SSSPSPEQGN LMGNYNTKPI LPDSDDPEKE KETLPDDQQS EAVGYNQDTV PPNSRSSKGN  1020
IPCDGKFVEQ MVGSSSVCSR GASNCPTYTL KTRYDQDTDL SENATEEPEG RTSTKAAPPR  1080
GSKGVKKKRK AEVHNLSERK RRDKINKKMR ALQELIPNCN KVDKASMLDE AMEYLKTLQL  1140
QVQMMSMGSG FFMPPNPMML HTAMQHMNAQ NLIGPYSPMG MRMQMGMGMG MSMGMGMGMG  1200
FPNLPGIREA RLNNMVGFPG QVSLMSMSPS PFAAARFCPQ SVQAPAPAFH MPMQVEQFPV  1260
PGVAPNAIPL STSKDSNTTC Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1086	1102	KKKRKAEVHNLSERKRR
2	1087	1103	KKKRKAEVHNLSERKRR
3	1088	1104	KKKRKAEVHNLSERKRR
4	1098	1103	ERKRRD
5	1099	1104	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-39	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO64129