PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO64164
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB
Protein Properties Length: 441aa    MW: 49107.3 Da    PI: 7.5775
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO64164genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
         OMO64164 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding46.58.4e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +++eE+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
         OMO64164  67 RGTFSQEEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
                      899*******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQEEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG  120
IDPVTHKPLS EVENGEDKSQ QQTSNSSRDK VSGATTTSEL NLNAADNLKP GDQRQPSVTY  180
QQLEMEGCSS SKPMNSNNNN SNKDFFLDLA GHHHHHLPIQ QLNYASSNAR LSSSTSNPTL  240
WFNQTSKAFD INSEFSSSPI STLLPPLTSS FLSSPMGYKP SSVSVSSDSP SMASFTVNNG  300
SRYWETAASA ANNSNSSSST ELQSNSSFFE NGSFSNWGLG DCSTSEKEAP IHLMESQGEE  360
IKWPDYLNNP LLMAAALQNQ TPQSLYNIEI KSESHFLTNN TSSVSSNSLW PHNQQQQEPL  420
KNSDICAKDI QRLTAAAYGH I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118LKKKLRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.31e-92MYB family protein