PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO64176
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 386aa    MW: 45148.8 Da    PI: 7.4374
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO64176genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3104.27e-33118222199
               EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvk 95 
               f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+ ++ +l++ 
  OMO64176 118 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGEsEKDRLFID 218
               89****************************66677899*************************************************6658889999***9 PP

               EE-S CS
        B3  96 vfrk 99 
               ++r+
  OMO64176 219 WRRR 222
               9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    
MNFAQEEKGY CNNNEEEDDE EVIREMNHFP FSSSSSSASS KYKDMASHHH HHHQDLWLGS  60
QEDYKTQEPA INFDRKLEQM DLTLGPNNNN NNNEESNVGS CRVGDSSSRC IIEKEHMFDK  120
VVTPSDVGKL NRLVIPKQHA EKYFPLDSSS NEKGLLLNFE DRNGKSWRFR YSYWNSSQSY  180
VMTKGWSRFV KEKKLDAGDI VSFQRGVGES EKDRLFIDWR RRPNAPDPTS LAHMQLQNHF  240
NFPQSVRWGR LYSMPQSMCV SRSYEPLHRL NYSIYPFNHH HQQQFHHHQQ QQQQQQQQQH  300
QAIGYGNVSQ YYNLRTSTTG SNQVHHQIGG MQEPMVIDSV PVVHHQANKT AGKRLRLFGV  360
NMECPPQQDD IESTTSTFFS SWRRHK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-82B3 family protein