PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO64178
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 1463aa    MW: 165730 Da    PI: 5.1025
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO64178genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1241.3e-38691993128
       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                G+rFhPtd el+++yL++k  g++  + ++i+ev di+ +ePw+Lp  ++++++++ wyfF + + ky++++r +r+t++gyWk tg+ ++v+s+  +++
  OMO64178  69 TGYRFHPTDFELLHYYLHNKNLGRDALV-QAIAEVeDICGLEPWELPghSNIHSGDQVWYFFYRPSYKYRNSTRIKRTTNQGYWKPTGNFRKVMSRdLETE 168
               7************************877.7799998***********6448888999**************************************955667 PP

       NAM 100 vglkktLvfykgr..apkgektdWvmheyrl 128
               +g k+tLvfykgr  ++  +kt W+mhey+l
  OMO64178 169 IGKKRTLVFYKGRvgDNIKNKTGWIMHEYEL 199
               **********98621344579********97 PP
2NAM119.24e-375086283127
       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
               +G+rFhPtd+elv++yL +kv g+   + e+i+ev ++++ +PwdLp  +k+++ ++ wyfFs+r+ +    +r +r+t++gyWk tgk ++v    ++  
  OMO64178 508 VGYRFHPTDKELVDHYLWNKVLGHAGLV-EAINEVeGLCNRDPWDLPgcSKLESVDQIWYFFSRRKDN----TRVKRTTENGYWKVTGKPRHVEG--KNGS 601
               7***********************9666.78999989**********54477778889*****98764....69*******************88..5568 PP

       NAM 101 glkktLvfykgrapkgektdWvmheyr 127
               g+k+tLvf+kgr+p++++t Wvmhey 
  OMO64178 602 GIKRTLVFHKGRTPNAKRTPWVMHEYI 628
               **************************6 PP
3NAM1081.1e-33104311833128
       NAM    3 pGfrFhPtdeelvveyLkkkvegkklelee......vikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92  
                +GfrFhPtdee +     k+v g++l+++       vi+++ di+++ePw+Lp  ++++++e+ w+fF++ + ky+++ rknr+tk+gyW  tgk +++
  OMO64178 1043 KGFRFHPTDEEAIELLYDKRVVGRDLTVQVgdsivpVITQLkDICEFEPWELPglSELASGENVWFFFCSPRFKYRKSIRKNRVTKKGYWTPTGKPRNI 1141
                7************88888889999955533556665799999***********6448888999************************************ PP

       NAM   93 lsk..kgelvglkktLvfy....kgrapkgektdWvmheyrl 128 
                +++  + + +g ++tLvfy    +++++k +kt+Wv+he +l
  OMO64178 1142 VTTydGMKITGRRQTLVFYkdrvSNKKKKENKTSWVIHELEL 1183
                *998778889*********666557888889********876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1463 aa     Download sequence    
MTINNGKFPN WKNVNTVLLG STRLESYSTR SYLTSHYLVP TPRFSVFTAL LYKLHPVGYY  60
LWKKILTLTG YRFHPTDFEL LHYYLHNKNL GRDALVQAIA EVEDICGLEP WELPGHSNIH  120
SGDQVWYFFY RPSYKYRNST RIKRTTNQGY WKPTGNFRKV MSRDLETEIG KKRTLVFYKG  180
RVGDNIKNKT GWIMHEYELT APLPNQTSFV LCKLKKKFGK AEVPCIEESQ SNQYLPPTLG  240
KYLANNEAPA EAARCLMGQS DPNEILSKLQ EFNAHEGVEL PGYQSTESWN SYLVGDHVPY  300
NESSNLPFNS GNPNSVNSVP NNESSKYLPF NCGNPISETT VPNDQLNSSE VPMEQEVHQD  360
QSGTAEQDMN EFGKLVPADN ERSNQHNLVL ESDGSTSSNL EIPATEDSVQ MDMSNMAVES  420
MDELFAELGA LPQGNRHVQE NGYGEALDDW ISVDMFRKFE IPNLDHQSST NEDQNTATAN  480
GGCGLSFAGI VEPPDSINHP SRKSGNIVGY RFHPTDKELV DHYLWNKVLG HAGLVEAINE  540
VEGLCNRDPW DLPGCSKLES VDQIWYFFSR RKDNTRVKRT TENGYWKVTG KPRHVEGKNG  600
SGIKRTLVFH KGRTPNAKRT PWVMHEYIFT STLLENKEGI FLCKLKNKEE EKDNTSSSEV  660
FQPSVVADDV TPQSSPMFDP DEILAMLEEP DRDKGRNNFP SLQLPMHEEQ LPHSEEYAYF  720
HEFTDGHNKV QHQSNTSEQN DELWMTYLND EVYPDERSNK QVDESVDCSL ASDGIHMTLP  780
GESSRKRSRF ENGGQCGAFG NEECQATYEQ VANASSMLCE HAGSKKIHAM AMAMANAQNV  840
TNTAVENESH GRDKLLSVQN DSKETDAPSV DPAVDVKCVF HIALVESLDY PPATNFYEPQ  900
YQECSEILIE QEEDPKRISK QGKFSGKSAS LDKARDVKQQ VTAANLPQKE NTIRESDIKL  960
KTAKQTNEKT SLQMQGRESA ASDEKGHHMI HVFSYGIPFN AWDAVMSILT LNRGFPFPTI  1020
FDISSSNLKL PMFGNLDEMN FVKGFRFHPT DEEAIELLYD KRVVGRDLTV QVGDSIVPVI  1080
TQLKDICEFE PWELPGLSEL ASGENVWFFF CSPRFKYRKS IRKNRVTKKG YWTPTGKPRN  1140
IVTTYDGMKI TGRRQTLVFY KDRVSNKKKK ENKTSWVIHE LELTLNLPNI KSITLCKLKK  1200
KHGKVDVSRG EEVQSSQSSP SNVENHSANN TIAEGQLNCS ELLTESEAVN ENSGIQTQFT  1260
TNEQDDDDEF VSSLLVNNDE MINPEERSNQ SYLVVENEGS KLPPKFPKNH EDFGELINQK  1320
PKGTSGSVGT QDQAYTTTEY DNLSWSSIFN ANNQICSKEG SKQHNIFAEN KDPATLFLDI  1380
IPMEHSGLDE FLQNGIFMAD LFTVPEAVEN PDRVEHDKFS TNEQDDKFRN SIITTDEVEA  1440
PKIFRSKEQN FATKTEAFDF PPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111671204KKKKENKTSWVIHELELTLNLPNIKSITLCKLKKKHGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.12e-35NAC family protein