PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO64198

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 447aa MW: 49685.9 Da PI: 5.3403

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO64198	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.4	2.3e-12	263	308	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L OMO64198 263 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 308 799*********************6.....4*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MDELIISSSS SSSLVSFTQE TTPPPSTLQQ RLQFVIQSQQ EWWAYAIFWQ TSNDEHGRLF 60 LSWGDGHFQG VKDTSPRLSA NNIPNNDNMN IPGLNNERRK VMKGIQALIG DNHDIDMSTM 120 IDNTDISDAE WFYVMSLTRS FTAGEGIPGK ALSTGSLVWL TGAHELQFYN CERAREAQMH 180 GIETMVCIPT SCGVLEIGSS EMIRENWGLV QQVKSLFGGA QSSYVDSEHS DSDCPLLAMN 240 NMEKRTPKKR GRKPGLGRET PLNHVEAERQ RREKLNHRFY ALRAVVPNVS RMDKASLLSD 300 AVSYINELKA KIEDLESQLQ RECKKVKVEM VDATDNQSTT TSVDQTTTTT RPSSNSSSPT 360 AAGGASGGLE LDIKIMGNDA VIRAQSENVN FPGARLMIAL RDLEFQIHHA SMSCVNEIML 420 QDIVVSVPEG LRTEEGLKSA VLRRLEQ

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MDELIISSSS SSSLVSFTQE TTPPPSTLQQ RLQFVIQSQQ EWWAYAIFWQ TSNDEHGRLF  60
LSWGDGHFQG VKDTSPRLSA NNIPNNDNMN IPGLNNERRK VMKGIQALIG DNHDIDMSTM  120
IDNTDISDAE WFYVMSLTRS FTAGEGIPGK ALSTGSLVWL TGAHELQFYN CERAREAQMH  180
GIETMVCIPT SCGVLEIGSS EMIRENWGLV QQVKSLFGGA QSSYVDSEHS DSDCPLLAMN  240
NMEKRTPKKR GRKPGLGRET PLNHVEAERQ RREKLNHRFY ALRAVVPNVS RMDKASLLSD  300
AVSYINELKA KIEDLESQLQ RECKKVKVEM VDATDNQSTT TSVDQTTTTT RPSSNSSSPT  360
AAGGASGGLE LDIKIMGNDA VIRAQSENVN FPGARLMIAL RDLEFQIHHA SMSCVNEIML  420
QDIVVSVPEG LRTEEGLKSA VLRRLEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	6e-84	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO64198