PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO64265

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

LBD

Protein Properties

Length: 203aa MW: 22849.3 Da PI: 5.3182

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO64265	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.2	1.4e-38	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaC++lrr+C ++Cvlapyfp ++ kfa vhk+FGasnv+k+++ ++e++reda+++lvyeA ar+rdPvyG+ + i++lq+ +++l+ +l+++k++ OMO64265 14 PCAACRMLRRRCDSNCVLAPYFPGDEIDKFAGVHKVFGASNVIKMIQMVEEKNREDAVKALVYEATARIRDPVYGSSRAIFQLQKMVQELRMQLESTKAQ 113 7**********************************************************************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence
MGLEAQARSR THQPCAACRM LRRRCDSNCV LAPYFPGDEI DKFAGVHKVF GASNVIKMIQ 60 MVEEKNREDA VKALVYEATA RIRDPVYGSS RAIFQLQKMV QELRMQLEST KAQVLELQQQ 120 KDQLLGILLN VNHLDLLSPV DGASLSLDYD DSMANDPIKF PVQYGLTILA HEAAYGVAIY 180 SDPSERIAHM IEEDWIGIDI LRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-42	LBD family protein

Link Out ? help Back to Top
Ensembl	OMO64265