PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO64345
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 323aa    MW: 36522.3 Da    PI: 4.7518
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO64345genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97e-20125174255
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               +y+GVr+++ +grW+AeIrdp +   r+r++lg+++taeeAa  +++a+ +++g
  OMO64345 125 KYRGVRQRP-WGRWAAEIRDPAS---RTRVWLGTYDTAEEAALVYDRAAIRIKG 174
               8********.**********843...4***********************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MNPASSSSRV KYTEERRVIS KTVKSRWFPM ESPSPSQANA KVPKVVRISF TDGDATDSSS  60
DECEQVKHHQ RVKRHINEIR IEDCSPVDFI KPANKQNKSN NPAATLRSNK KQQQPQCLSN  120
GNGIKYRGVR QRPWGRWAAE IRDPASRTRV WLGTYDTAEE AALVYDRAAI RIKGPDALTN  180
FVKPPVRASP PEIEVETVSG YDSGQESHSL CSPTSVLRFQ SNEEAELQTE SKDDSFELTE  240
SEWRPEQGIP IPKESSNLSD EYLLTDPDAL CDYFDSGNNP APIFFDEMRL PEESINLAQD  300
FSDISFKLDV DFGSCTWDVD NYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.11e-53ERF family protein