PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO64407
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 327aa    MW: 35791.2 Da    PI: 9.4836
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO64407genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-1356100147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
         OMO64407  56 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 100
                      789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MGIHGLHSLP PPNTVAPPLP TPSTSVSTPT AGNTAAAFSE DHSKKIRKPY TITKSRESWT  60
EQEHDKFLEA LQLFDRDWKK IEAFVGSKTV IQIRSHAQKY FLKVQKSGTS EHVPPPRPKR  120
KAAHPYPQKA PKNAAVASQV AGPFQSSSAL LDSGYTYRPD SSSMPGHPIG TAPLSSWSYN  180
SVPPANVSQV TKDDAVLGGP TIAYNSCYSS SNESTPRTWS FGETIDRGDH GKQSRVMPDF  240
AQVYSFIGSV FDPSANGHLQ KMKQMDPINL ETVLLLMRNL CVNLTSPEFE DHRQLLSSYA  300
ESERVKPGSS YYGINTHHKA VSAVPTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-94MYB_related family protein