PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO64467
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C2H2
Protein Properties Length: 260aa    MW: 27322.3 Da    PI: 8.5061
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO64467genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001997119123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               ykC+ C+k Fs+   L  H  +H
  OMO64467  97 YKCSVCNKAFSSYQALGGHKASH 119
               9***********99999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MALETLNSPT AATAPFHFED TNLHCLESFT KRKRSKRPRF DHVPTEEEYL ALCLIMLARG  60
GAGAASASTS TIPHRHRSPT PPTAPPPAPT SEPKLSYKCS VCNKAFSSYQ ALGGHKASHR  120
KLAGGNDDQS TSTTTSATAG GTTSAASNPS GRSHECSICH KSFPTGQALG GHKRCHYEGG  180
ANGHNANANA NTSASAVTSS EGVGSTNTVS QLSQRGFDLN LPALPEFSPA LFVSGADDEV  240
ESPHPNKKPR HLILPKIEVN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-55C2H2 family protein