PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO64574
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 241aa    MW: 26912.5 Da    PI: 6.2429
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO64574genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-204695255
       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
              +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a++k++g
  OMO64574 46 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAALAYDRAALKFKG 95
              7********.**********94....45************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MTAMVTALSQ VMGTDQQLLS FPQSSESTVK QEPAVQDQPE NTRRRHYRGV RQRPWGKWAA  60
EIRDPKKAAR VWLGTFDTAE DAALAYDRAA LKFKGTKAKL NFPERVQGNT EISYLTGQGD  120
SSSAAAAVGP EQNPTTTPAH AVPSPWSQDS YPDLFQYAQL LSSSNDADIS YYTSNLFKQD  180
QLPLSPQFPS MSASSTFTSQ HHLRPHQDQT RFSTMYDQSS SGYDYLNHQY GKDFDPSNPS  240
E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.11e-44ERF family protein