PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO64601
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 363aa    MW: 40271.9 Da    PI: 6.9484
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO64601genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-20171220255
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  OMO64601 171 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 220
               59******9.**********965...5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MAATMDFYSS RAVQSDLYGG ELMEALEPFM KSVSSSSSSS FPSPSYSSFS SSPSPSPCLP  60
STSYLSFSSS QSQTQPSFYQ DGCCYTNPNP NPIDQFSGFQ QQPGSTIGLN HLTPAQIHQI  120
QAQFHLQNNQ PSYLYQNPQP QNSTNNLMLS FLSPKPVPMK QMGSPPKPTK LYRGVRQRHW  180
GKWVAEIRLP KNRTRLWLGT FDTAEEAALA YDKAAYKLRG DFARLNFPNL RHQGSHIGGD  240
FGEYKPLHSS VDAKLQAICE SLELNQKQGS KKKTAAESKS KNKKVHVAEP EPEEKTVKVE  300
NSPSPVSPVL SDSEGSAESS PLSELTFSDF NEQPWPEVVS SSETFMLSKF PSYEIDWDAI  360
LKA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-76ERF family protein