PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO65299
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family FAR1
Protein Properties Length: 258aa    MW: 30128 Da    PI: 6.1864
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO65299genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.21.8e-2578168190
      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
               +fY  Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++   ++++    + + tr gC a+l++ +++  kw+vtk+++eHnH+l+
  OMO65299  78 EFYVVYGRRTGFTVRIHHNRRSRINNMVIGQDFVCSKEGFREKKYMYRKDR-VlpPPPITREGCPAMLRLALRDGVKWVVTKFVKEHNHSLM 168
               6******************************************99983333.244899********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MESTSSQGID SDESVRCLQV ENFDDQELVD HELSDNIDLC MGEVDKIIDE SNESSPLFGD  60
AVEPYIGMEF KTRDAAKEFY VVYGRRTGFT VRIHHNRRSR INNMVIGQDF VCSKEGFREK  120
KYMYRKDRVL PPPPITREGC PAMLRLALRD GVKWVVTKFV KEHNHSLMSP GKVPWRGTAK  180
NLISEDEKDQ RIRELTQELN NEKQKCKRRC AAYEEQLRSI LKFVEEHSDQ MSKRVEDIVK  240
NIREFEDSQH EGSNCRYV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.14e-43FAR1 family protein