PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO65313
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family FAR1
Protein Properties Length: 221aa    MW: 25373.8 Da    PI: 7.389
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO65313genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR187.91.4e-2756144189
      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
               +fY eYA++vGF vr+ + ++s  +g++  r++ C+k+g++ ++k +   e+++r++ r gCka++ vk+ek+gkw+vt++e+eHnH+l
  OMO65313  56 NFYTEYARRVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNNKGSFGPEKKPRPSAREGCKATILVKMEKTGKWVVTRFEKEHNHPL 144
               6**************************************************************************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MVVCNVLSIW WLSVDLDKEV GNVDGSVEEK TAEPEGSEIL EPYVGMEFES EDDARNFYTE  60
YARRVGFVVR IMQRRRSGID GRTLARRLGC NKQGFSPNNK GSFGPEKKPR PSAREGCKAT  120
ILVKMEKTGK WVVTRFEKEH NHPLIVTANG FSTTGDKDKK IEELTMELAR QEQLCSAYRE  180
KLFSFMNSVE EQTEELSSKI QVVVDNVRKL EAEMQRFSHR R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.18e-76FAR1 family protein