PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO65563
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 261aa    MW: 28688 Da    PI: 4.9465
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO65563genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1873123155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
               + y+GVr++  +g+WvAeIr p   + r kr +lg+f ta eAa a+++a+k+++g
  OMO65563  73 CNYRGVRQRT-WGKWVAEIRAP---N-RgKRLWLGTFPTASEAAFAYDEAAKAMYG 123
               56*****999.**********8...3.35************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MGFAPDQNLR PIQTQTQSLD CSRKRKRRDG LTIADTLRML SQDEEAKKAR KAPAKGSKKG  60
CMKGKGGPQN QKCNYRGVRQ RTWGKWVAEI RAPNRGKRLW LGTFPTASEA AFAYDEAAKA  120
MYGDKAILNM PHVLDSDSVA STSHAVSDSI TASTSNSEIC VNDGDGEVVE PTRKVKLELP  180
PPVDCSEAPS ASGTMNLTAD DENQDAKDKD VKDDCFSWLD GVDLSVEIPR DIWDTASYFT  240
SYNFSDEEVF SLEDLLSAPP I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12328RKRKRR
22451KRKRRDGLTIADTLRMLSQDEEAKKARK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.26e-28ERF family protein