PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO65564
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 244aa    MW: 26853 Da    PI: 4.9237
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO65564genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-1867117155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
               + y+GVr++  +g+WvAeIr p   + r kr +lg+f ta eAa a+++a+k+++g
  OMO65564  67 CNYRGVRQRT-WGKWVAEIRAP---N-RgKRLWLGTFPTASEAAFAYDEAAKAMYG 117
               56*****999.**********8...3.35************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MGRIQTQTQS LDSSRKRKRR DGLTVAHTLK LLGQDEDEEA KKARKAPAKG SKKGCMKGKG  60
GPQNQKCNYR GVRQRTWGKW VAEIRAPNRG KRLWLGTFPT ASEAAFAYDE AAKAMYGDKA  120
ILNTPHVLDS DSVASTSNSE ICVNDGDVEV VESSSMVVKL LDQLPPLVDC SEVPSTSSAM  180
NLTADENQDT KDQYLKEDCF SWLNDVDLSE EMTQDVSTAI SYFTSHSSED EVLSLEDLLS  240
APPI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11520RKRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.21e-25ERF family protein