PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO65577
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 246aa    MW: 27245.3 Da    PI: 4.8254
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO65577genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1875125155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               + y+GVr++  +g+WvAeIr p  ng  kr++lg+f t  eAa a+++a+k l+g
  OMO65577  75 CNYRGVRQRV-WGKWVAEIRAP--NG-GKRIWLGTFPTDSEAALAYDEAAKTLYG 125
               56******99.**********9..33.5**********99***********9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MEIITTMGTC DLNPKSIESQ PRKRRRRTND GLSVAETLKL LTQNVNSKQV GIKAPGKGSK  60
RGCMKGKGGP QNQRCNYRGV RQRVWGKWVA EIRAPNGGKR IWLGTFPTDS EAALAYDEAA  120
KTLYGAKAVL NFPQGLDSST GQLSVASNSD SEHVSEIHDE VMNLLNNSDD NDDVGIADDD  180
HKAEALPSID DVMNLIGDDV IQGSEEKVPE KDEFLVWFRG AVKYDTELTY EYDTELSTFH  240
DFFANN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12226RKRRR
22228RKRRRRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-39ERF family protein