PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO65729

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 399aa MW: 45973.6 Da PI: 6.9734

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO65729	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.8	2.3e-49	22	149	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelv 100 pGfrFhPtdeel+++yL++kv++k++++ + i+e+diyk++PwdLpk ++e+e yf++kr +ky+++ r+nr+t sg+Wkatg dk+v+s+ ++e + OMO65729 22 PGFRFHPTDEELLSFYLQRKVNKKPIKI-KLIEEIDIYKYDPWDLPKPSMEGESESYFYCKRGRKYKNSIRPNRVTGSGFWKATGIDKPVYSRggdGHECI 121 9*************************.89***********76667789***********************************97766677 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 glkktLv+y+g+a kg+ktdW+mhe+rl OMO65729 122 GLKKTLVYYRGSAGKGTKTDWMMHEFRL 149 **************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MNQLHGQDYG RAKMDEDDVP LPGFRFHPTD EELLSFYLQR KVNKKPIKIK LIEEIDIYKY 60 DPWDLPKPSM EGESESYFYC KRGRKYKNSI RPNRVTGSGF WKATGIDKPV YSRGGDGHEC 120 IGLKKTLVYY RGSAGKGTKT DWMMHEFRLP SHEDNPKFPI QEAEVWTICR IFKRNVSHKK 180 YIMPNSTNYK TRSQSKNDDE IYISFGAPIL QHHDDNYEKQ VIVNHDQING MMRSQYWHAA 240 AADELSPIAR PQPTTTDHQP PLIGPSSSTF SSNPENDFLT YANWEELRSV VEYSLHDPFD 300 LLGGEAEELV DQENGQAQSG LDHVQESNST LVRICEQCNY GSLQGRCVVC GGVGISEAYY 360 CKECTQLEKD RDGCPRIINL GSSRKDLYYE RKKYGFKKR

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MNQLHGQDYG RAKMDEDDVP LPGFRFHPTD EELLSFYLQR KVNKKPIKIK LIEEIDIYKY  60
DPWDLPKPSM EGESESYFYC KRGRKYKNSI RPNRVTGSGF WKATGIDKPV YSRGGDGHEC  120
IGLKKTLVYY RGSAGKGTKT DWMMHEFRLP SHEDNPKFPI QEAEVWTICR IFKRNVSHKK  180
YIMPNSTNYK TRSQSKNDDE IYISFGAPIL QHHDDNYEKQ VIVNHDQING MMRSQYWHAA  240
AADELSPIAR PQPTTTDHQP PLIGPSSSTF SSNPENDFLT YANWEELRSV VEYSLHDPFD  300
LLGGEAEELV DQENGQAQSG LDHVQESNST LVRICEQCNY GSLQGRCVVC GGVGISEAYY  360
CKECTQLEKD RDGCPRIINL GSSRKDLYYE RKKYGFKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-71	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO65729