PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO65778
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 130aa    MW: 14714.9 Da    PI: 9.977
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO65778genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF595.9e-192774148
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
              k+i+n+++r v fskR++gi+KKA  LS L++  + v+i+s++g++y+
  OMO65778 27 KKIDNQRKRWVAFSKRKKGIFKKAAQLSMLTGETIGVVIISEQGRVYT 74
              68*********************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    
MDEGEASTSN SIPQRRKGCG RRKIEIKKID NQRKRWVAFS KRKKGIFKKA AQLSMLTGET  60
IGVVIISEQG RVYTSDNIDS VIEQFLSIKE YQAADESLKI KEAGEVLTKM KGDKCLALFD  120
LNKTPDEQFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.12e-17M-type_MADS family protein