PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO66284

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 430aa MW: 47459.3 Da PI: 9.2445

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO66284	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.8e-17	59	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l OMO66284 59 KGGWTPEEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 105 688***************************.**********986 PP
2	Myb_DNA-binding	60.9	2.8e-19	111	157	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v+++G+ W+ Ia+ ++ gR +kqc++rw+++l OMO66284 111 KGPWTQEEDDKIIELVARYGPTKWSVIAKALP-GRIGKQCRERWHNHL 157 79****************************.***********97 PP
3	Myb_DNA-binding	53	7.8e-17	163	206	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++ OMO66284 163 KDAWTLEEELALMNAHRVYGNK-WAEIAKVLP-GRTDNAIKNHWNS 206 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MSESQTEERC LENKQLTTAS SSSVSEGGGS AVVKSPGISS PAPSSPTNRR TTGPIRRAKG 60 GWTPEEDETL RNAVAAFKGK SWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD 120 KIIELVARYG PTKWSVIAKA LPGRIGKQCR ERWHNHLNPD IKKDAWTLEE ELALMNAHRV 180 YGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLATGK LPPVGKNGLQ NGTKDMNTPG 240 TTKNLLVYSR KGSDSTATSS GTTDICKPDD DGKDQLESSA PVQDMAASSS VVRNESADSF 300 DVNPCCCNSE LGAKFESCRI SSANVEDRVD TQSRKDTPNY GSLCYEPPRL QEVTSLDTDH 360 SNKKGMQRHE WTSTPIRSPI SFFTPPCVKG SGLSAQSPES ILRIAAKTFP NTPSIFRKRK 420 TRPQSLTLPP

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MSESQTEERC LENKQLTTAS SSSVSEGGGS AVVKSPGISS PAPSSPTNRR TTGPIRRAKG  60
GWTPEEDETL RNAVAAFKGK SWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD  120
KIIELVARYG PTKWSVIAKA LPGRIGKQCR ERWHNHLNPD IKKDAWTLEE ELALMNAHRV  180
YGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLATGK LPPVGKNGLQ NGTKDMNTPG  240
TTKNLLVYSR KGSDSTATSS GTTDICKPDD DGKDQLESSA PVQDMAASSS VVRNESADSF  300
DVNPCCCNSE LGAKFESCRI SSANVEDRVD TQSRKDTPNY GSLCYEPPRL QEVTSLDTDH  360
SNKKGMQRHE WTSTPIRSPI SFFTPPCVKG SGLSAQSPES ILRIAAKTFP NTPSIFRKRK  420
TRPQSLTLPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-137	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO66284