PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO66323

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 357aa MW: 41207.1 Da PI: 10.0513

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO66323	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.9	3.5e-16	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++++++m+ ++R +k+c +rw++yl OMO66323 4 RQRWRAEEDALLRAYVKQYGPKEWNLVSQRMNtaLNRDAKSCLERWNNYL 53 89***********************************************7 PP
2	Myb_DNA-binding	36.4	1.2e-11	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + OMO66323 59 KGSLTEEEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 6788****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MRDRQRWRAE EDALLRAYVK QYGPKEWNLV SQRMNTALNR DAKSCLERWN NYLKPGIKKG 60 SLTEEEQRLV IRLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE QKEKNKTVDP 120 IEEGKYDRIL ETFAEKLVKE RHTPAFSMAT SNGGFLHTDP PSPAPTLLPP WLSNSSNASA 180 VRPPSPSVTL SLSPSTVTAA PPIPWLQPER MSENTPVVLG NMGPHGPVPP CGENLVVSEL 240 VECCRELEEG HRAWVAHKKE AAWRLRRVEL QLESEKVSRR REKMEEIESK VKALREEQKT 300 TLDRIEAEYR EQLEGLRRDA EAKEQKLAEQ WAAKHLRLTK FLEQMGCRPR IPEPNGR

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MRDRQRWRAE EDALLRAYVK QYGPKEWNLV SQRMNTALNR DAKSCLERWN NYLKPGIKKG  60
SLTEEEQRLV IRLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE QKEKNKTVDP  120
IEEGKYDRIL ETFAEKLVKE RHTPAFSMAT SNGGFLHTDP PSPAPTLLPP WLSNSSNASA  180
VRPPSPSVTL SLSPSTVTAA PPIPWLQPER MSENTPVVLG NMGPHGPVPP CGENLVVSEL  240
VECCRELEEG HRAWVAHKKE AAWRLRRVEL QLESEKVSRR REKMEEIESK VKALREEQKT  300
TLDRIEAEYR EQLEGLRRDA EAKEQKLAEQ WAAKHLRLTK FLEQMGCRPR IPEPNGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	1e-144	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO66323