PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO66395

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 313aa MW: 35404.4 Da PI: 6.7283

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO66395	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.4e-05	53	75	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg+ F++ L H+++H OMO66395 53 YSCSFCGREFRSAQALGGHMNVH 75 99*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence
MEQARYWMWT KRRSHGLVEG STNYDESWEE QAFAEDAAAA GSLGGCIWPP RSYSCSFCGR 60 EFRSAQALGG HMNVHRRDRA RLKQSPTDDH HDHEILHHHH HQPSQNPFLP MGFQYQPDHQ 120 VCNFVYNPNP NSDHHHATLP SPSSTSKENI CLDKTLVPPF SSPILQEHPN STPKSLVADR 180 YYHFSDLRSE LGDNSSSIIE SAGCKVKADY VQTDLSVSLN LVVRRARPTT SGSKEETSTV 240 GLGCKRKRNI DDDIPLATLP FFLKPISIDQ RHHFQPADDE LTELISPSSS VDDIDLELRL 300 GDRPKVKYQK TIL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	15	KRRSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06070.1	2e-24	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO66395