PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO66396

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 172aa MW: 19261 Da PI: 4.9338

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO66396	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	32	54	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C k Fs+ L H++ H OMO66396 32 YTCSFCQKGFSNAQALGGHMNIH 54 9********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence
METKHPKTEK YSSDQTAVWS LDQELSGQPK SYTCSFCQKG FSNAQALGGH MNIHRRDRAK 60 LRESSEENNM LSLDDHNSQV DSEIIVLESS EDKSSSSNAK RSSPSKISRE EYIYDGVSSS 120 SASPARNKDA VKTLSVENYE DSSLLPMNKN IELDLELRLG PEPNQDNQTR TI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	1e-17	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO66396