PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO66974

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WRKY

Protein Properties

Length: 167aa MW: 19586.2 Da PI: 4.8267

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO66974	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.1	3.2e-32	106	164	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ver++edp++v++tYeg Hnh+ OMO66974 106 LDDGYKWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDNEDPSYVITTYEGIHNHQ 164 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence
MSNNSNFRPP DEYSPESDRA DDQSNFQFPE EYFTFDGWLD DYPEAFMSGS NSIQNPVNQG 60 NYEVNTSAET STFLHRPAAN ESETVRERRE FRERYAFKTK SEVEILDDGY KWRKYGKKMV 120 KNSPNPRNYY RCSVEGCPVK KRVERDNEDP SYVITTYEGI HNHQSAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	3e-44	WRKY family protein

Link Out ? help Back to Top
Ensembl	OMO66974