PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO67022
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20543.5 Da    PI: 8.0628
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO67022genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.84.3e-161054145
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
              +r en   rq  +skR+ gi KK +E+ vLCd++va++++s+t k
  OMO67022 10 ERLENMKARQAKYSKRKRGIVKKVKEIAVLCDVDVALLLISPTEK 54
              5789*************************************9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MGRRTKQKLE RLENMKARQA KYSKRKRGIV KKVKEIAVLC DVDVALLLIS PTEKPTVVVG  60
KDKDLSTVIE RMSRMRLEER EDRCWKKCME NPTTSSSRLI QETHPKSKIP LHEDQLSELK  120
ETIAKKNKIL SDWRNPTNIE DLAQLNIMEE HIQYSEADQL EQQGREEGAE GTDDLET
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26320.16e-12M-type_MADS family protein