PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO67108

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 883aa MW: 97368.8 Da PI: 5.576

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO67108	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.3	2e-11	651	696	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ K +Ka++L + +eY+k Lq OMO67108 651 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIEYVKFLQ 696 99*********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 883 aa Download sequence
MEKPNFPRQV EIVDLESDGF DFFPDKGGTT KGNAISVEDY IEQRDIELAI KASINTATSD 60 NNNYIDLDSY DDDLILLTFE PPNTHFGKKR ENGVKPFSDH SVTEPGESSN SKASKDPHFI 120 CDFCVEPKEE NESFSIKGCS HFYCTDCMIK YVASKLQDKI SSITCPVPNC KGTLEPEYCR 180 NLLPREVFER WGDALCEAMI LGSERFYCPY KDCSMVLIDD GGQAVKESEC PNCRRLFSAQ 240 CKVPWHPDID CKEFQRLHKD EREREDIMLM KLAKDKKWAR CPRCRFVVER TAGCRYIMCR 300 CGTAFCYDCG STRVNAHHYC LACKRKMDFV FESTLNIRRR VDTMILEEIM LMDDYLDQYF 360 SSSSWSDMNV KERSSWVHSE PDHPDTLLSG LLGVMYNNQD DNNKNSSPVR MLGSNHAIGS 420 LPAQDISPSL APSAESGCGV DHGNLLPGDQ GDHGQICSGN SSKEMMIDEN LGFGNMGLKF 480 HSSASLSCSH EKDLSVVGDM IPSLPFNGET SEFRRSLTAT GLETLSPISQ SWDPQTYDGV 540 SSFPSLVGQT RIQRSCLPGE NGTLDNEKSI NNRFVEIDKI FRPENLSVSI NAKGKQDALY 600 SSFPSEPQIT KTMIGLPSLL QGPSATANNG FNNGIGKPRV RARRGQATDP HSIAERLRRE 660 KIAERMKNLQ ELVPNSNKTD KASMLDEIIE YVKFLQLQVK VLSMSRLGAA GAVVPLITDI 720 QAEGSNGLSL SPLAGQGVDF SPSPDQVVFE QEVVKLMESN VKLAMQYLQS KGLCLMPIAL 780 AAAISSGKAS SSSSSSSGQA SEERKKFGYN NSLVNNDSVI VCNSRSSHCS SSSSSNGSLP 840 GVGIHHIPSD GNFMIGKLSG SLMAKACNGT FKQEEVNALC TAK

Sequence ? help Back to Top

Protein Sequence Length: 883 aa Download sequence

MEKPNFPRQV EIVDLESDGF DFFPDKGGTT KGNAISVEDY IEQRDIELAI KASINTATSD  60
NNNYIDLDSY DDDLILLTFE PPNTHFGKKR ENGVKPFSDH SVTEPGESSN SKASKDPHFI  120
CDFCVEPKEE NESFSIKGCS HFYCTDCMIK YVASKLQDKI SSITCPVPNC KGTLEPEYCR  180
NLLPREVFER WGDALCEAMI LGSERFYCPY KDCSMVLIDD GGQAVKESEC PNCRRLFSAQ  240
CKVPWHPDID CKEFQRLHKD EREREDIMLM KLAKDKKWAR CPRCRFVVER TAGCRYIMCR  300
CGTAFCYDCG STRVNAHHYC LACKRKMDFV FESTLNIRRR VDTMILEEIM LMDDYLDQYF  360
SSSSWSDMNV KERSSWVHSE PDHPDTLLSG LLGVMYNNQD DNNKNSSPVR MLGSNHAIGS  420
LPAQDISPSL APSAESGCGV DHGNLLPGDQ GDHGQICSGN SSKEMMIDEN LGFGNMGLKF  480
HSSASLSCSH EKDLSVVGDM IPSLPFNGET SEFRRSLTAT GLETLSPISQ SWDPQTYDGV  540
SSFPSLVGQT RIQRSCLPGE NGTLDNEKSI NNRFVEIDKI FRPENLSVSI NAKGKQDALY  600
SSFPSEPQIT KTMIGLPSLL QGPSATANNG FNNGIGKPRV RARRGQATDP HSIAERLRRE  660
KIAERMKNLQ ELVPNSNKTD KASMLDEIIE YVKFLQLQVK VLSMSRLGAA GAVVPLITDI  720
QAEGSNGLSL SPLAGQGVDF SPSPDQVVFE QEVVKLMESN VKLAMQYLQS KGLCLMPIAL  780
AAAISSGKAS SSSSSSSGQA SEERKKFGYN NSLVNNDSVI VCNSRSSHCS SSSSSNGSLP  840
GVGIHHIPSD GNFMIGKLSG SLMAKACNGT FKQEEVNALC TAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	6e-55	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO67108