PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO67152
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 201aa    MW: 22084.5 Da    PI: 4.3959
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO67152genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.3e-181766255
       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
              ++kGVr +k +g+Wv+eIr p++   r r++lg++++ae+Aa+a +aa  +l+g
  OMO67152 17 KFKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSAEKAARAFDAALYCLRG 66
              79****999.**********933...5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MVKQISEKPA AERSDLKFKG VRKRKWGKWV SEIRLPNSRE RIWLGSYDSA EKAARAFDAA  60
LYCLRGRSAK FNFPDNPPDI AGGRSLAPAE IQAAAARFAN SDQPPRSQSD QSTSGFQIES  120
PSPSISDVTV QLDTSDQLPM DGSFLDLLTM DSGNYASDYG IFPGFDDLSS DFLGSSSLPN  180
VGIEEDNFDG ILVPDSFLWN F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925KGVRKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.14e-55ERF family protein