PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO67207

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

GRF

Protein Properties

Length: 1152aa MW: 129208 Da PI: 6.0751

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO67207	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.6e-24	835	878	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e OMO67207 835 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 878 79***************************************998 PP
2	QLQ	29.8	1.9e-11	774	798	9	33
QLQ 9 qlLksQilAyKyLaanqPvPpeLlq 33 +L++Q+l++Ky++++ P+Pp+Ll OMO67207 774 KELEHQALIFKYIISGIPIPPDLLY 798 59*********************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 1152 aa Download sequence
MSKSEDSGSP GWSASFFMQT TEDMARAVAA AAAAATAARS PRPSAVYSSK DENGGSRFEK 60 LQRHVSKVLK GFSQPTEVRS GTYNPEVLTS QKRQWASFQL QYLDHRSLKE PSRLFESMVV 120 VGLPPNCDIQ ALQRQYVSRK FEGSGKLRSA LSFNSRVEPN LEPQVLFVYP PEKQLPLKYK 180 DLLSFCFPGG VEVHAVEKTP SMSELNEILL SQEHLKQSDL SFVFRLQVAD DSTLYGCCVL 240 VEEVVQKPSG LLSLISDRQP AYPSLSRYVM TTRRCYCILS RLPLFELHFG VLNSIFDEER 300 LERLTKSIGD IELELSESYS NEAIVDDEST DQGALEDKQL DTSELSSGDT KSGDTADSNS 360 LENQTPERDF ESNKAVNHDT VVAIDLETDT FASKKESSGA NPEDYDNDVD DFATTKQVAE 420 RRLPNAVLPL LRYYQYESSE SSCSFQGSPC EDRNLRSDVD DTETEEASIS GQEDSSDHLD 480 ILEWAKANNH GSLQILCEYY RLPCPARGST VRFHPLEHLH PLEYHRPDEK VLHIAGSTID 540 LRSCTTSLEF AEAHTALSVE EEATALSTWA VACMCGSLRL EHVLTIFAGA LLEKQIVVVC 600 SNLGVLSATV LSIIPLIRPY QWQSLLMPVL PDDMLDFLDA PVPYIVGVKN KTSEVQSKLA 660 NVILVDANKN QIKASAIPQL PQHKELFACL SPYHAKLVGE SYLGRRRPVY ECTDVQIEAA 720 KGFLSVLRSY LDSLCANMRS HTITNVQSNN DKVSLLLRES FIDSFPSRDR PFMKELEHQA 780 LIFKYIISGI PIPPDLLYTV KRSCLDSSLS SRLFSRHPQH MGWNCFQMGL GRKVDPEPGR 840 CRRTDGKKWR CSKEAYPDSK YCERHMHRGK NRSRKPVEVT ATSISNPSTN ISSITKTYNN 900 PCSFSSLSSI SLSSSSAAAA ADSQQLHHQL RYPPAYNSQV NHNHPFIYSH ASRPQENTTH 960 SLLDSGPYSH HTNSDHYRRN GYVYGVKEEI DEHAFFSEPS GTMRSFSGSS VDDPWQLTPL 1020 TMSSSSSKQR NCSGLQSDHQ YSYLQLQSLS DHPSKIKQEG DEQHCYVLGS DFKCHEMPNT 1080 IKLERGEPEK TTVHRFFDEW PPKQRDSSWL DLDDNKSSNN SSSVSTTRLS ISIPSTSHDF 1140 PIFNSRAHHN DG

Sequence ? help Back to Top

Protein Sequence Length: 1152 aa Download sequence

MSKSEDSGSP GWSASFFMQT TEDMARAVAA AAAAATAARS PRPSAVYSSK DENGGSRFEK  60
LQRHVSKVLK GFSQPTEVRS GTYNPEVLTS QKRQWASFQL QYLDHRSLKE PSRLFESMVV  120
VGLPPNCDIQ ALQRQYVSRK FEGSGKLRSA LSFNSRVEPN LEPQVLFVYP PEKQLPLKYK  180
DLLSFCFPGG VEVHAVEKTP SMSELNEILL SQEHLKQSDL SFVFRLQVAD DSTLYGCCVL  240
VEEVVQKPSG LLSLISDRQP AYPSLSRYVM TTRRCYCILS RLPLFELHFG VLNSIFDEER  300
LERLTKSIGD IELELSESYS NEAIVDDEST DQGALEDKQL DTSELSSGDT KSGDTADSNS  360
LENQTPERDF ESNKAVNHDT VVAIDLETDT FASKKESSGA NPEDYDNDVD DFATTKQVAE  420
RRLPNAVLPL LRYYQYESSE SSCSFQGSPC EDRNLRSDVD DTETEEASIS GQEDSSDHLD  480
ILEWAKANNH GSLQILCEYY RLPCPARGST VRFHPLEHLH PLEYHRPDEK VLHIAGSTID  540
LRSCTTSLEF AEAHTALSVE EEATALSTWA VACMCGSLRL EHVLTIFAGA LLEKQIVVVC  600
SNLGVLSATV LSIIPLIRPY QWQSLLMPVL PDDMLDFLDA PVPYIVGVKN KTSEVQSKLA  660
NVILVDANKN QIKASAIPQL PQHKELFACL SPYHAKLVGE SYLGRRRPVY ECTDVQIEAA  720
KGFLSVLRSY LDSLCANMRS HTITNVQSNN DKVSLLLRES FIDSFPSRDR PFMKELEHQA  780
LIFKYIISGI PIPPDLLYTV KRSCLDSSLS SRLFSRHPQH MGWNCFQMGL GRKVDPEPGR  840
CRRTDGKKWR CSKEAYPDSK YCERHMHRGK NRSRKPVEVT ATSISNPSTN ISSITKTYNN  900
PCSFSSLSSI SLSSSSAAAA ADSQQLHHQL RYPPAYNSQV NHNHPFIYSH ASRPQENTTH  960
SLLDSGPYSH HTNSDHYRRN GYVYGVKEEI DEHAFFSEPS GTMRSFSGSS VDDPWQLTPL  1020
TMSSSSSKQR NCSGLQSDHQ YSYLQLQSLS DHPSKIKQEG DEQHCYVLGS DFKCHEMPNT  1080
IKLERGEPEK TTVHRFFDEW PPKQRDSSWL DLDDNKSSNN SSSVSTTRLS ISIPSTSHDF  1140
PIFNSRAHHN DG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	8e-42	GRF family protein

Link Out ? help Back to Top
Ensembl	OMO67207