PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO67225
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NF-YA
Protein Properties Length: 331aa    MW: 36355.5 Da    PI: 8.8264
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO67225genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.34.4e-32184240158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                d p+YVNaKQy++Il+RRq Rakle+++kl  ksrkpylheSRh hAl+R RgsgGrF
   OMO67225 184 DGPIYVNAKQYHGILRRRQYRAKLEAQNKL-LKSRKPYLHESRHLHALNRVRGSGGRF 240
                57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MAIRIQNLPK KTFDGSSVHS LSQLSVSAPW WNSNEQQIPQ SSPQNISLKV ETPSQLYHNA  60
THLGLQLPDQ ESSSVQAIGQ SHNELGVMRL TNSQCTSSES GHDESCGKDT EGQIKPVFLL  120
NNPNTLFSPS HLNYTHSMAG ARYLFADAYH GGLYTPYGQQ AIIQPQMAGG APTRVPLPFD  180
LAEDGPIYVN AKQYHGILRR RQYRAKLEAQ NKLLKSRKPY LHESRHLHAL NRVRGSGGRF  240
LSAKKLQQPD PTVTTSCVDR SELESRCSHV AGYAGSSTSC SDITSVSNSD GNFQQLEHRL  300
TDNSPRVIGH MRSNGSSGMC NGVQNCSSIV R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.21e-41NF-YA family protein