PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO67258
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 269aa    MW: 30142.5 Da    PI: 9.1318
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO67258genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.7e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l  +v+++G+g+Wk+I r          R+  ++k++w+++
         OMO67258  5 KQKWTAEEEEALRAGVAKYGKGNWKSIQRDPElspflFARSNIDLKDKWRNL 56
                     79*****************************9999*978***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MGNPKQKWTA EEEEALRAGV AKYGKGNWKS IQRDPELSPF LFARSNIDLK DKWRNLCGGP  60
GGQGSRSSKP KASSDGSTPP IAVPVKPIAL PKPVIHDSSK TESLAPNQYN EMIIEAISAL  120
KEPNGSDSRA IVSYVEQRLE VPQSFRKQLC SRLKRLVEVE KLEKVENCYK IRKKDEMFGT  180
KTQLPQPKGT RLKQLQNSCD MVKEASDTAA DLIAQSENKD YMAMEAVKES DRISKMAEDM  240
DSLLQLAKEI FERCSGGEIV HINRLYRLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.28e-52MYB_related family protein