PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO67267

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 377aa MW: 42515.1 Da PI: 9.5991

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO67267	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.1	3.1e-13	201	246	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f Lr+llP+ +K +Ka++L + eY+ksLq OMO67267 201 HMMSERKRREKLNESFTALRSLLPSG-----TKKDKASVLISTREYLKSLQ 246 8899*******************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MCLDGCYNEE NIQPGGLSLY FEYRQLVFPL ENDHRLVPGF GFGNNMPYIE FWELELHNRA 60 SHQTQRQFYR EAGIKTAVFM GCRSGEIELG SSNLVQLNMH MEMRSFFPQD FSRQLSPPAA 120 AATAGDQLPG QPNDPNRPSS SSSSLRSMLS APSSSSSARA SLRAQSMLKR AITFYRNFNL 180 ARRENLLRNR PGATTSNQLH HMMSERKRRE KLNESFTALR SLLPSGTKKD KASVLISTRE 240 YLKSLQSQID ELNRRNRLLE AQVLPSKEAA GELVNGSSNE RFNVRITPVP ESASDQRIVD 300 VRVSVRGQRP IVDVIIHLLE FLKLDRSVSL MSIEANTNVT ESGSVNLVNL RLRIEGNGWD 360 EATFQEAVRR LIADLAQ

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MCLDGCYNEE NIQPGGLSLY FEYRQLVFPL ENDHRLVPGF GFGNNMPYIE FWELELHNRA  60
SHQTQRQFYR EAGIKTAVFM GCRSGEIELG SSNLVQLNMH MEMRSFFPQD FSRQLSPPAA  120
AATAGDQLPG QPNDPNRPSS SSSSLRSMLS APSSSSSARA SLRAQSMLKR AITFYRNFNL  180
ARRENLLRNR PGATTSNQLH HMMSERKRRE KLNESFTALR SLLPSGTKKD KASVLISTRE  240
YLKSLQSQID ELNRRNRLLE AQVLPSKEAA GELVNGSSNE RFNVRITPVP ESASDQRIVD  300
VRVSVRGQRP IVDVIIHLLE FLKLDRSVSL MSIEANTNVT ESGSVNLVNL RLRIEGNGWD  360
EATFQEAVRR LIADLAQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	205	210	ERKRRE
2	206	211	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	4e-52	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO67267