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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OMO67388 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 1016aa MW: 116311 Da PI: 7.8476 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 26.2 | 1.9e-08 | 428 | 470 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+ rWT+eE el + v+++G++ Wk a t+g + + ++k+ w+
OMO67388 428 KRRWTPEEYELVQKFVEKHGPK-WKMLADTLG--KHRHHVKDTWRR 470
579*****************99.********9..788999999886 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 1016 aa Download sequence |
MGKKVREKDR HERENNQVEE GVVLERQSDF EGASTGNMDD VPKSMNRDID RKKRKEDNGE 60 MKKDRIKKRK LVFDADGEES HKAQKKHKKS KDGTDEVKEA SRETCSVGKE NVKQESSKEM 120 YLENIFELEA KRVRKAKHKN KNKDRNDAAA IATEDLESSE MQEVVGLRNS CRFEDINKMV 180 HGKEGEFRKN KKKKKQKPEK VGGDLSGCIT VMSSMTDENE TNKKKSKCHK TGSDGNDHAS 240 FNGIEDQEVA CCNGKEDSAM NEAQCRNGGN VDVRNAEDVN RGMEKKSKSV KGKKEGKRLK 300 ADSRTRKSVN TTNESENATP KERSKRVSFS DQVEVFPHAD VTDADQDGKD GFVYARRYSK 360 EEDTIIMDAV ANYVESHNLG DDGIHMIMNC HQYPEIRNCW NEIQAAIPWR PKDSVYRRGH 420 VLFERDEKRR WTPEEYELVQ KFVEKHGPKW KMLADTLGKH RHHVKDTWRR IRQTNINRGH 480 WSQQEYQSLF DLVNLDLSMK AFEEKKSKHG MLRDNICWTA ISDKMETRGF VNCCKKWYES 540 LTSPMVAEGI WADADDYRML DALSSLDACC MEDVDWDNLL EHRSGDLCRK RWNQMVRHIG 600 PHRDQPFNEQ VETMSKRYRP DMVDAREAID SKQPVVVMTH AYGNRSGVRY MTGGLKVYYV 660 PWRPFLMQNT LPTFYGTLPI VRTILIREKI SLVHGHQAFS TLCHEALMHA RTMGHKVVFT 720 DHSLYGFADV GSIHMNKVLQ FTLADVTRAI CVSHTSKENT VLRSGLPPEK VFMIPNAVDT 780 AMFKPAQERL GHDEIVIVVI SRLVYRKGAD LLVEVIPEVC HLYPNVSFLD HGISDKIMDR 840 VEMLGAVPHA SVRSVLISGH IFLNSSLTEA FCIAILEAAS CGLLTVSTRV GGVPEVLPDD 900 MVVLAEPDPS DMVQAIKKAI SILPKIDPQV MHERMKRLYN WNDVAKRTEI VYNRALKCSD 960 QSLLERLSRY LSCGAWAGKL FCLVMIIDYL LWRLLELLQP AKDIEEVPDV VLPQDE |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 51 | 56 | RKKRKE |
| 2 | 51 | 70 | RKKRKEDNGEMKKDRIKKRK |
| 3 | 51 | 91 | RKKRKEDNGEMKKDRIKKRKLVFDADGEESHKAQKKHKKSK |
| 4 | 52 | 71 | RKKRKEDNGEMKKDRIKKRK |
| 5 | 52 | 92 | RKKRKEDNGEMKKDRIKKRKLVFDADGEESHKAQKKHKKSK |
| 6 | 53 | 72 | RKKRKEDNGEMKKDRIKKRK |
| 7 | 54 | 71 | RKEDNGEMKKDRIKKRKL |
| 8 | 67 | 89 | KKRKLVFDADGEESHKAQKKHKK |
| 9 | 188 | 228 | RKKRKEDNGEMKKDRIKKRKLVFDADGEESHKAQKKHKKSK |
| 10 | 191 | 198 | KKKKKQKP |
| 11 | 191 | 231 | RKKRKEDNGEMKKDRIKKRKLVFDADGEESHKAQKKHKKSK |
| 12 | 192 | 232 | RKKRKEDNGEMKKDRIKKRKLVFDADGEESHKAQKKHKKSK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G41020.1 | 1e-121 | MYB_related family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OMO67388 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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