PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO67647

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 259aa MW: 29859.5 Da PI: 6.6832

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO67647	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	6.1e-18	11	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed llv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl OMO67647 11 KGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 58 79********************************************97 PP
2	Myb_DNA-binding	55.3	1.5e-17	64	109	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ OMO67647 64 RGKMTPQEERLVLELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 109 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence
MMKMEQEEVR KGPWTEQEDI LLVNFVHLFG DRRWDFIAKV SGLNRTGKSC RLRWVNYLHP 60 GLKRGKMTPQ EERLVLELHA KWGNRWSRIA RKLPGRTDNE IKNYWRTHMR KKAQEKKRAM 120 SPPSSSSSSS TTTTVDSLPF SGTGKASFYD TGGHDDDMVN NALAGKNSSP EFEEEKGYSM 180 DDIWKDIDDI QLSEENNTLM KPLSDNNNNN LISSMASPPW DYCWDSLWNE EESKNMFLPT 240 NNQFLACYEF GFGKAPLTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46130.1	4e-91	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO67647