PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO67732
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family WOX
Protein Properties Length: 261aa    MW: 29319.8 Da    PI: 8.0218
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO67732genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.2e-201978357
              --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
              +R+++tkeq++ Le+l+++  r+psae++++++++l     ++ ++V++WFqN++a++++
  OMO67732 19 SRWNPTKEQINMLENLYRQgIRTPSAEQIQHITSRLkvygTIEGKNVFYWFQNHKARQRQ 78
              7*****************99****************99999*****************97 PP
2Wus_type_Homeobox112.32.5e-361880365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++RW+Pt+eQi++Le+ly++G+rtP++e+iq+it++L+ yG ie+kNVfyWFQN+kaR+rqkq
           OMO67732 18 NSRWNPTKEQINMLENLYRQGIRTPSAEQIQHITSRLKVYGTIEGKNVFYWFQNHKARQRQKQ 80
                       79***********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MEGGGNMDMA GSGGTTGNSR WNPTKEQINM LENLYRQGIR TPSAEQIQHI TSRLKVYGTI  60
EGKNVFYWFQ NHKARQRQKQ KQENMAYINR YLHRTTQPIY PPPLPPAAAA GTNVVCRPYF  120
LAQSDHHHLG LYSHCPKVII PGGIKRRGRP EKMEMARVYE TTSAPSYDHM FHQDYNMMIP  180
ADRIENYGVR VKNDETLALF PLHPTGIIEG RATNNISSNT FSGNSASSCE TTAGIDQEAA  240
SATEQPFFDF FSSHQGSCES D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.18e-52WOX family protein