PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO67829

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WOX

Protein Properties

Length: 210aa MW: 22931.3 Da PI: 7.4097

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO67829	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.3	8.1e-16	26	86	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l ++ +++V++WFqNrR + ++ OMO67829 26 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 86 89***************99***********************************997 PP
2	Wus_type_Homeobox	107.9	5.9e-35	25	88	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q OMO67829 25 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 88 589***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MEDQAQAQAQ DPNSPSHGSE RSEPVRSRWT PKPEQILILE SIFNSGMVNP PKDETVRIRK 60 LLEKFGSVGD ANVFYWFQNR RSRSRRRQRQ LQAASLAGEQ RNHHQAQVFG GGGAIQYENC 120 GVSAAATAVS MGFANNSPCF ANSSDNYLIG SSSSSSCGVM GDDGIENFLS MSGQMGFQEI 180 GQSSCVTSVL CPSETSNLHY QSGKNAWQRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	5e-45	WOX family protein

Link Out ? help Back to Top
Ensembl	OMO67829