PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO67872
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LBD
Protein Properties Length: 257aa    MW: 28221.6 Da    PI: 6.728
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO67872genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.41.4e-39441451101
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+aela+++++
  OMO67872  44 PCGACKFLRRKCITGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILSLQQQVASLQAELAMVQNQ 144
               7***********************9989**********************************************************************998 PP

    DUF260 101 l 101
               l
  OMO67872 145 L 145
               6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MAEPHCPGAM SETRRRSTAT RATMPAVEAD EPLVVANTPV PAAPCGACKF LRRKCITGCI  60
FAPHFGSDQG AARFAAVHKV FGASNVSKLL LHIPVNRRQD AVVTISYEAQ ARLSDPVYGC  120
VSTILSLQQQ VASLQAELAM VQNQLINSRF AMANALQTSQ QQQQQQAQQQ QQQHQQQHQQ  180
QIALLQPAYS NTSSASNNNL INISNFTSNF DLVAETTAPS SQSMDHLHLS RPCHDDEDDE  240
EESRIPAIFA NDIIHHR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-60LBD family protein