PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO68007
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family FAR1
Protein Properties Length: 261aa    MW: 29714.6 Da    PI: 7.3035
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO68007genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR189.93.4e-2896183291
      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
               fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++ ++  k  r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p
  OMO68007  96 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDMRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHALTP 183
               ******************************************9988..9**************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MPMLILWSFS SKKVFLAVEF GVDGDVNGGF VVEVEASSID NDNEAGENLV EGTYQQGLNE  60
KMERISPDVG DIPEGIPADE PYVGQEFESE AAAHAFYNAY ATRVGFIIRV SKLSRSRRDG  120
SAIGRALVCN KEGFRMPDMR EKIVRQRAET RVGCRAMILV RKVSSGKWVV TKFVKEHTHA  180
LTPGKGRRDC IYDQYPNEHN KIRELTQQLA NEKKRAATYK RHLELIFEQI EEHNQSLSKK  240
IHHIVESVRE IENKEQQQSH V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-101FAR1 family protein