PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO68012

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

DBB

Protein Properties

Length: 240aa MW: 26306.9 Da PI: 4.4631

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO68012	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.8	3.9e-07	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++ C ++ lC++C +e H H++ OMO68012 4 QCDVCERAPATVICCADEAALCAKCDVEVHAAnklaskHQR 44 7*****************************65667777765 PP
2	zf-B_box	30.7	6.7e-10	53	94	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + + C+ ++ek++ +fC +++ l+C+dC + +H+ H OMO68012 53 KLPPCDICQEKPAFIFCVEDRALFCQDCDEPIHSAgsltanH 94 6789*****************************656666666 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MKIQCDVCER APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQCL SNKLPPCDIC 60 QEKPAFIFCV EDRALFCQDC DEPIHSAGSL TANHQRFLAT GIRVALGSSS CNKNTEKTGL 120 EPPSKSAPQF SMKVPAQQQS SFASSWAVDD LLQFSDIEST DKKDQLELGE LEWLADMGLF 180 GDQMAPQEAL AAAEVPQLPV VPQSSNINSY RPTKYSMPLK KPRLEIPDDD DEFFTVPDLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06040.1	2e-96	DBB family protein

Link Out ? help Back to Top
Ensembl	OMO68012