PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO68590

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 433aa MW: 47711 Da PI: 7.0105

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO68590	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.2	2.6e-12	377	422	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +k + +++L +Av+YIk+Lq OMO68590 377 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTSDMLDLAVDYIKDLQ 422 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MESDLQQLHP HLVDYHQPQP HQKQMNSGLT RYQSAPSSYF TGILDRDFCQ EFLNRPSSPE 60 TESIIARFLS NSGDAGGGGG NTENMSDQNL CGMTQNSPVR ETVVKVEQQT QIMTPINNQT 120 GIMQQQQQQQ QQQQQGNYSS ASQNFYQSQP QQNLSNQQSG SSMDYGRIPT SMGLPRPPQM 180 KMGGGNNSNL IRHSSSPAGL FANINIENII AGYGVMKGVG DYGGVNSTKR EPTFPPPISR 240 PPSSGMMSPI AEMGNKNIGP NSSENAGFGE NSHNNNFSSS GFPASSWDDS MMNTISDNMS 300 GVKRLREDDR SLSGLDLDGS ESQNTDSSIR PPPILAHHLS LPKSSPDMSA IEKFLQYQDS 360 VPCKIRAKRG CATHPRSIAE RVRRTKISER MRKLQDLVPN MDKQTNTSDM LDLAVDYIKD 420 LQKQVKVYVA VSQ

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MESDLQQLHP HLVDYHQPQP HQKQMNSGLT RYQSAPSSYF TGILDRDFCQ EFLNRPSSPE  60
TESIIARFLS NSGDAGGGGG NTENMSDQNL CGMTQNSPVR ETVVKVEQQT QIMTPINNQT  120
GIMQQQQQQQ QQQQQGNYSS ASQNFYQSQP QQNLSNQQSG SSMDYGRIPT SMGLPRPPQM  180
KMGGGNNSNL IRHSSSPAGL FANINIENII AGYGVMKGVG DYGGVNSTKR EPTFPPPISR  240
PPSSGMMSPI AEMGNKNIGP NSSENAGFGE NSHNNNFSSS GFPASSWDDS MMNTISDNMS  300
GVKRLREDDR SLSGLDLDGS ESQNTDSSIR PPPILAHHLS LPKSSPDMSA IEKFLQYQDS  360
VPCKIRAKRG CATHPRSIAE RVRRTKISER MRKLQDLVPN MDKQTNTSDM LDLAVDYIKD  420
LQKQVKVYVA VSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	3e-50	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO68590