PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO68697

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 191aa MW: 22336.5 Da PI: 9.6091

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO68697	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.5	1.5e-54	8	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 +ppGfrFhPt+eelv +yL++k+++ k++l +vi ++d+yk+ePwd+++k+k e++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk+v+s k++ OMO68697 8 VPPGFRFHPTEEELVGYYLRRKINSLKIDL-DVIIDIDLYKMEPWDIQAKCKLgydEQSEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVVS-KSN 106 69**************************.99**********953333333566**********************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g++ktLvfykgrap+g+ktdW+mheyrl OMO68697 107 IIGMRKTLVFYKGRAPNGRKTDWIMHEYRL 136 **************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence
MMELESCVPP GFRFHPTEEE LVGYYLRRKI NSLKIDLDVI IDIDLYKMEP WDIQAKCKLG 60 YDEQSEWYFF SHKDRKYPTG TRTNRATAAG FWKATGRDKA VVSKSNIIGM RKTLVFYKGR 120 APNGRKTDWI MHEYRLQTSE HGPPQEEGWV VCRAFRKPTP NQRQGFEALN HAYYIRDNNG 180 QVIRPPISSI S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71930.1	3e-88	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO68697