PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO68774

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 515aa MW: 55742.2 Da PI: 8.9692

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO68774	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OMO68774 87 FVCEICNKGFQRDQNLQLHRRGH 109 89*******************88 PP
2	zf-C2H2	12.1	0.00061	163	185	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ OMO68774 163 WKCDKCSKKYAVQSDWKAHSKTC 185 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MSNITAGDGG SFSSGTAGEE QEQVNHFNGS NSANLPSNSN NGSISQQDHQ QPPPAATKKK 60 RNLPGTPDPN AEVIALSPKT LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRTS 120 TEIRKRVYVC PEPSCVHHNP ARALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA 180 HSKTCGTKEY KCDCGTIFSR RDSFITHRAF CDALTEESKA NQGLVVVANN NMGSSNLQSQ 240 VNELIPSIPI NNNNPNTCSM NNINVSDPLF SHETKIPLQP LSMAGSMFSS SPGNLFGGAK 300 TTSSSSSCLQ STLFEGNGNL FAAAASASMS ATALLQKAAQ MGATASNASL NSPLMGKSSF 360 NTSMAPPTFV STQTQNINNG ELTNQFMQKS QQEIQTEFFN NAANNNNNGG MFPGVFDQNA 420 VLLKSIENEH HQHGASSNSN STTTTPRSNG GNPLSGFNGD MMTVDFLGIG GSRPIARNLL 480 EKQQDLEFGG MGQARLQGLS HFQQHAALEK PMWKV

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MSNITAGDGG SFSSGTAGEE QEQVNHFNGS NSANLPSNSN NGSISQQDHQ QPPPAATKKK  60
RNLPGTPDPN AEVIALSPKT LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRTS  120
TEIRKRVYVC PEPSCVHHNP ARALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA  180
HSKTCGTKEY KCDCGTIFSR RDSFITHRAF CDALTEESKA NQGLVVVANN NMGSSNLQSQ  240
VNELIPSIPI NNNNPNTCSM NNINVSDPLF SHETKIPLQP LSMAGSMFSS SPGNLFGGAK  300
TTSSSSSCLQ STLFEGNGNL FAAAASASMS ATALLQKAAQ MGATASNASL NSPLMGKSSF  360
NTSMAPPTFV STQTQNINNG ELTNQFMQKS QQEIQTEFFN NAANNNNNGG MFPGVFDQNA  420
VLLKSIENEH HQHGASSNSN STTTTPRSNG GNPLSGFNGD MMTVDFLGIG GSRPIARNLL  480
EKQQDLEFGG MGQARLQGLS HFQQHAALEK PMWKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-102	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO68774