PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO68794
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NF-YB
Protein Properties Length: 130aa    MW: 14527.9 Da    PI: 4.7187
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO68794genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB134.14.2e-421811797
     NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
              mk++lPa+akisk+ak+t+qec++efisfvt+easdkc++e+rkt+ngdd++wal+ lGf++y+e++  yl+kyre+e+ek
  OMO68794  1 MKQILPARAKISKEAKQTLQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSALGFDNYAEAIVRYLHKYREAEREK 81
              9*****************************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    
MKQILPARAK ISKEAKQTLQ ECATEFISFV TGEASDKCHK ENRKTVNGDD ICWALSALGF  60
DNYAEAIVRY LHKYREAERE KANLNKLQAA ATCSSSQGKD IEEDQDQSSE DKNGAQQQAT  120
QQQEEEGTPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.11e-48NF-YB family protein