PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO68966
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 391aa    MW: 43669.5 Da    PI: 8.7495
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO68966genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.5e-16176227155
       AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  OMO68966 176 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 227
               89****99**********99966...3.6*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    
MAKLSQQKNN APTNNNINKT GNNGTSNGVT KVKRTRRSVP RDSPPQRSSI YRGVTRQSPD  60
IRVFMHFDYG NVSGIGGQGG MKLIYGIRIA GMNHRTRKDA KSHIWEIKTF SGAYDDEEAA  120
AHAYDLAALK YWGQDTILNF PLSTYQKELK EMENQSREEY IGSLRRKSSG FSRGVSKYRG  180
VARHHHNGRW EARIGRVFGN KYLYLGTYAT QEEAATAYDM AAIEYRGLNA VTNFDLSRYI  240
KWLKPNNQTN SAENNPNPNL DTTPSTITPS PPNQELNLSF FNGKNNNNNL QASNPSDQAL  300
LTQSRPANAT SALGLLLQSS KFKEMMEMTS AADHCQLAPP VSDPVQCSFP EDIQTYFGCQ  360
DSSSYGDHGE DIIFGELNSF MPPMFQCDLD A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.13e-76AP2 family protein