PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO69098

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 386aa MW: 42687.4 Da PI: 6.1095

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO69098	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00053	289	311	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y Cp+C+ F ++ ++ +H ++H OMO69098 289 YGCPNCSAAFDTSQEFASHVQSH 311 67******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MAMNFNHCNS ASSLGLSLGL GNEAIDLSLV LSPPDSNSGL NRFITDGTTN GLNFDRIGQS 60 GLISETITQV KKTFVSPYRS VQMVQSAVDY APLQLPPSAA GFPLTDFTFK EEIVKTTRFL 120 SPASTMERLF ASNNGVRNQG IFPTNGGNGG GYTNQVMNPF PSLNSSRFLD HEANFNGFSP 180 VKREPVFDSL PFYPMSQNSS SNQGLTLGWR NSDHNLNYSN YMNFQERQQD EPIYAEPISQ 240 VPVAATASPP QILGSNVTLE EMSDENDFEC PVGYDGRTHS LRDNPDGKYG CPNCSAAFDT 300 SQEFASHVQS HYQHETEDQR KRRMAAKCRR KRLRLVESPH GLTAVPDQSF KRRDYGKEKF 360 ADIIGNPVKE SNNGRLGGVI IKEEPM

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MAMNFNHCNS ASSLGLSLGL GNEAIDLSLV LSPPDSNSGL NRFITDGTTN GLNFDRIGQS  60
GLISETITQV KKTFVSPYRS VQMVQSAVDY APLQLPPSAA GFPLTDFTFK EEIVKTTRFL  120
SPASTMERLF ASNNGVRNQG IFPTNGGNGG GYTNQVMNPF PSLNSSRFLD HEANFNGFSP  180
VKREPVFDSL PFYPMSQNSS SNQGLTLGWR NSDHNLNYSN YMNFQERQQD EPIYAEPISQ  240
VPVAATASPP QILGSNVTLE EMSDENDFEC PVGYDGRTHS LRDNPDGKYG CPNCSAAFDT  300
SQEFASHVQS HYQHETEDQR KRRMAAKCRR KRLRLVESPH GLTAVPDQSF KRRDYGKEKF  360
ADIIGNPVKE SNNGRLGGVI IKEEPM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	319	324	QRKRRM
2	321	332	KRRMAAKCRRKR
3	329	359	RRKRLRLVESPHGLTAVPDQSFKRRDYGKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18490.1	2e-11	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO69098