PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO69178
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 216aa    MW: 25214 Da    PI: 4.461
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO69178genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.68e-2641331128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv...ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
               lppGfrF+Pt+e+l++ yL kkv+g+ l++ +++++++iy     ePw++    ++++++ y F++ +kk+++gkr +r++  g Wk + +   v++++++
  OMO69178   4 LPPGFRFRPTEEQLLHGYLLKKVRGEALPC-DIVTDCEIYGErdkEPWKIFD--ENSTEKFYVFTQLKKKNPNGKRIERKAGIGSWKGQRT-DFVKDSNNN 100
               79****************************.89*****99643449****62..3456788**************************8866.456666999 PP

       NAM  99 lvglkktLvfy...kgrapkgektdWvmheyrl 128
               ++g kk +vf      +++  ++ +W+m ey+l
  OMO69178 101 HIGFKKPFVFEvknPSSSNINKQQHWLMTEYSL 133
               9*********943212333346899******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MVQLPPGFRF RPTEEQLLHG YLLKKVRGEA LPCDIVTDCE IYGERDKEPW KIFDENSTEK  60
FYVFTQLKKK NPNGKRIERK AGIGSWKGQR TDFVKDSNNN HIGFKKPFVF EVKNPSSSNI  120
NKQQHWLMTE YSLVNDLSGY VLCEIRNKNS NSSARVDEQV EDEDEDYEIM AEDQQVEDEE  180
YGITAEELEE MLSDPEIQPF SYQQNNYFTP VAALSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-24NAC family protein