PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO69226

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

SBP

Protein Properties

Length: 113aa MW: 12597.4 Da PI: 8.2128

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO69226	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	63.5	5e-20	1	49	4	52
STT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEET CS SBP 4 vegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhel 52 veg + dls+a++yhr ++vCe hsk+p+v++s le+rfCqqCsr l OMO69226 1 VEGSNLDLSSARDYHREYRVCESHSKSPKVILSALERRFCQQCSRIQLL 49 78999****************************************9776 PP

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence
VEGSNLDLSS ARDYHREYRV CESHSKSPKV ILSALERRFC QQCSRIQLLH LQSLLLKVLV 60 PFLAPSCISW ITDYGAQKDS SSPPTLDSDY RRGSLTPGVL KESGPSFCTL VVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	2e-20	SBP family protein

Link Out ? help Back to Top
Ensembl	OMO69226